E-Pub Full Text Articles

The Expression Profiles of lncRNAs and their Regulatory Network During Smek1/2 Knockout Mouse Neural Stem Cells Differentiation

Author(s): Qichang Yang, Jing Wu, Jian Zhao, Tianyi Xu, Ping Han* and Xiaofeng Song*
Pages: 1-12 (12)
MSIT: Malonylation Sites Identification Tree

Author(s): Wenzheng Bao*, De- shuang Huang and Yuehui Chen
Pages: 1-8 (8)
A Review of Pathway Databases and Related Methods Analysis

Author(s): Ali Ghulam, Xiujuan Lei*, Min Guo and Chen Bian
Pages: 1-17 (17)
SimExact – An Efficient Method To Compute Function Similarity Between Proteins Using Gene Ontology

Author(s): Najmul Ikram*, Muhammad Abdul Qadir and Muhammad Tanvir Afzal
Pages: 1-11 (11)
A Survey of Metrics Measuring Difference for Rooted Phylogenetic Trees

Author(s): Juan Wang, Xinyue Qi, Bo Cui and Maozu Guo*
Pages: 1-6 (6)
Lung Cancer Classification and Gene Selection by Combining Affinity Propagation Clustering and Sparse Group Lasso

Author(s): Juntao Li*, Mingming Chang, Qinghui Gao, Xuekun Song and Zhiyu Gao
Pages: 1-10 (10)
ZFARED: A Database of the Antioxidant Response Elements in zebrafish

Author(s): Azhwar Raghunath*, Raju Nagarajan and Ekambaram Perumal*
Pages: 1-5 (5)
Whole Aegilops tauschii Transcriptome Investigation Revealed Nine Novel miRNAs Involved in Stress Response

Author(s): Behnam Bakhshi* and Ehsan Mohseni Fard
Pages: 1-8 (8)
Complex Networks, Gene Expression and Cancer Complexity: A Brief Review of Methodology and Applications

Author(s): A. C. Iliopoulos, G. Beis, P. Apostolou and I. Papasotiriou*
Pages: 1-28 (28)
Finding Community of Brain Networks Based on Neighbor Index and DPSO with Dynamic Crossover

Author(s): Jie Zhang, Junhong Feng* and Fang- Xiang Wu*
Pages: 1-13 (13)
Application of a Deep Matrix Factorization Model on Integrated Gene Expression Data

Author(s): Yong- Jing Hao, Mi-Xiao Hou, Ying- Lian Gao, Jin- Xing Liu* and Xiang- Zhen Kong
Pages: 1-8 (8)
A Machine Learning-based Diagnosis of Thyroid Cancer Using Thyroid Nodules Ultrasound Images

Author(s): Xuesi Ma, Baohang Xi, Yi Zhang, Lijuan Zhu, Xin Sui* and Jialiang Yang*
Pages: 1-10 (10)
Elucidating the Functional Role of Predicted miRNAs in Post- Transcriptional Gene Regulation Along with Symbiosis in Medicago truncatula

Author(s): Moumita Roy Chowdhury, Jolly Basak and Ranjit Prasad Bahadur*
Pages: 1-13 (13)
High-dimensional Causal Mediation Analysis with a Large Number of Mediators Clumping at Zero to Assess the Contribution of the Microbiome to the Risk of Bacterial Pathogen Colonization in Older Adults

Author(s): Wei Liu, John P. Haran, Arlene Ash, Jeroan Allison, Shangyuan Ye, Jenifer Tjia, Vanni Bucci and Bo Zhang*
Pages: 1-26 (26)
White Blood Cell Image Segmentation based on Color Component Combination and Contour Fitting

Author(s): Chuansheng Wang, Hong Zhang*, Zuoyong Li*, Xiaogen Zhou*, Yong Cheng and Rongyan Chen
Pages: 1-9 (9)
Using the Chou’s Pseudo Component to Predict the ncRNA Locations Based on the Improved K-nearest Neighbor (iKNN) Classifier

Author(s): Chengyan Wu*, Qianzhong Li, Ru Xinga and Guo Liang Fan
Pages: 1-11 (11)
A Study on Host Tropism Determinants of Influenza Virus using Machine Learning

Author(s): Eunmi Kwon, Myeongji Cho, Hayeon Kim and Hyeon S. Son*
Pages: 1-14 (14)
Docking Techniques in Toxicology: An Overview

Author(s): Meenakshi Gupta, Ruchika Sharma and Anoop Kumar*
Pages: 1-10 (10)
Comparative Transcriptome Profiling of Disruptive Technology, Single- Molecule Direct RNA Sequencing

Author(s): Chaithra Pradeep, Dharam Nandan, Arya A Das and Dinesh Velayutham*
Pages: 1-8 (8)
Protein Secondary Structure Prediction: A Review of Progress and Directions

Author(s): Tomasz Smolarczyk, Irena Roterman- Konieczna and Katarzyna Stapor*
Pages: 1-18 (18)
Analysis and Comparison of RNA Pseudouridine Site Prediction Tools

Author(s): Wei Chen* and Kewei Liu
Pages: 1-8 (8)
Analysis of the Epigenetic Signature of Cell Reprogramming by Computational DNA Methylation Profiles

Author(s): Yongchun Zuo*, Mingmin Song, Hanshuang Li, Xing Chen, Pengbo Cao, Lei Zheng and Guifang Cao
Pages: 1-11 (11)
Integrating Second-order Moving Average and Over-sampling Algorithm to Predict Apoptosis Protein Subcellular Localization

Author(s): Yunyun Liang and Shengli Zhang*
Pages: 1-11 (11)
Prediction of RNA Secondary Structure Using Quantum-inspired Genetic Algorithms

Author(s): Sha Shi, Xin-Li Zhang, Le Yang, Wei Du, Xian-Li Zhao and Yun-Jiang Wang*
Pages: 1-9 (9)
The Human OncoBiome Database: A Database of Cancer Microbiome Datasets

Author(s): Nadia and Jayashree Ramana*
Pages: 1-6 (6)
Current State of the Art for Survival Prediction in Cancer Using Data Mining Techniques

Author(s): M.N. Doja, Ishleen Kaur* and Tanvir Ahmad
Pages: 1-13 (13)
Leukocyte Image Segmentation Based on Adaptive Histogram Thresholding and Contour Detection

Author(s): Xiaogen Zhou, Zuoyong Li, Huosheng Xie*, Ting Feng, Yan Lu, Chuansheng Wang and Rongyan Chen
Pages: 1-9 (9)
Predicting LncRNA Subcellular Localization Using Unbalanced Pseudo-k Nucleotide Compositions

Author(s): Xiao-Fei Yang, Yang Gao* and Pu-Feng Du*
Pages: 1-9 (9)
Integrated in silico Analysis to Study the Role of microRNAs in the Detection of Chronic Kidney Diseases

Author(s): Amina Khan, Andleeb Zahra, Sana Mumtaz, M. Qaiser Fatmi* and Jawad Khan*
Pages: 1-11 (11)
Improving Multi-type Gram-negative Bacterial Secreted Protein Prediction via Protein Evolutionary Information and Feature Ranking

Author(s): Liang Kong*, Lichao Zhang and Shiqian He
Pages: 1-9 (9)
Predicting Protein Phosphorylation Sites Based on Deep Learning

Author(s): Haixia Long*, Zhao Sun, Manzhi Li, HaiYan Fu and MingCai Lin
Pages: 1-9 (9)
An in silico Immunogenicity Analysis for PbHRH: An Antiangiogenic Peptibody by fusing HRH Peptide and Human IgG1 Fc Fragment

Author(s): Lin Ning, Bifang He, Juanjuan Kang and Jian Huang *
Pages: 1-7 (7)
Identification of Lysine Carboxylation Sites in Proteins by Integrating Statistical Moments and Position Relative Features via General PseAAC

Author(s): Saba Amanat, Adeel Ashraf, Waqar Hussain, Nouman Rasool and Yaser Daanial Khan*
Pages: 1-12 (12)
MD-LBP: An Efficient Computational Model for Protein Subcellular Localization from HeLa Cell Lines using SVM

Author(s): Muhammad Tahir* and Adnan Idris
Pages: 1-8 (8)
Identification of Cancerlectins by Using Cascade Linear Discriminant Analysis and Optimal g-gap Tripeptide Composition

Author(s): Liangwei Yang , Hui Gao *, Keyu Wu, Haotian Zhang , Changyu Li and Lixia Tang
Pages: 1-10 (10)
Analysis of Germin-Like Protein Genes (OsGLPs) Family in Rice Using Various In Silico Approaches

Author(s): Muhammad Ilyas*, Muhammad Irfan, Tariq Mahmood, Hazrat Hussain, Latif Ur Rahman and Ijaz Naeem
Pages: 1-17 (17)
Research on Gastric Cancer’s Drug-Resistant Gene Regulatory Network Model

Author(s): Zhi Li, Tianyue Zhang, Haojie Lei, Liyan Wei, Yuanning Liu, Yadi Shi, Shuyi Li, Bowen Shen, Hao Guo, Zhangqian Chen, Xiaorong Yi and Hao Zhang*
Pages: 1-10 (10)
Integration and Querying of Heterogeneous Omics Semantic Annotations for Biomedical and Biomolecular Knowledge Discovery

Author(s): Omer Irshad* and Muhammad Usman Ghani Khan
Pages: 1-17 (17)
ESDA: An Improved Approach to Accurately Identify Human snoRNAs for Precision Cancer Therapy

Author(s): Jia-hao Bi, Yan-mei Dong, Qi-en He and Kai Song*
Pages: 1-6 (6)
Computational Approaches for Transcriptome Assembly Based on Sequencing Technologies

Author(s): Yuwen Luo, Xingyu Liao, Fang-Xiang Wu and Jianxin Wang*
Pages: 1-14 (14)
Natural Scene Nutrition Information Acquisition and Analysis Based on Deep Learning

Author(s): Tianyue Zhang, Xu Wei, Zhi Li, Fangzhe Shi, Zhiqiang Xia, Mengru Lian, Ling Chen and Hao Zhang*
Pages: 1-9 (9)
A Comparative Study to Explore the Effect of Different Compounds in Immune Proteins of Human Beings Against Tuberculosis: An In-Silico Approach

Author(s): Manish Kumar Tripathi, Mohammad Yasir, Pushpendra Singh and Rahul Shrivastava*
Pages: 1-9 (9)
Predicting Drug-target Interactions via FM-DNN Learning

Author(s): Jihong Wang, Hao Wang, Xiaodan Wang and Huiyou Chang*
Pages: 1-9 (9)
HSEAT: A Tool for Plant Heat Shock Element Analysis, Motif Identification and Analysis

Author(s): Sarah Rizwan Qazi, Noor ul Haq, Shakeel Ahmad and Samina N Shakeel*
Pages: 1-8 (8)
Elastic Net Regularized Softmax Regression Methods for Multi-subtype Classification in Cancer

Author(s): Lin Zhang*, Yanling He, Haiting Song, Xuesong Wang, Nannan Lu, Lei Sun and Hui Liu
Pages: 1-13 (13)
Clinical Pathways Optimization from Decision Rules Based on Fusion Stream Mining and Fuzzy Unordered Rule Induction Strategy in Diabetes Treatment

Author(s): Simon Fong, Dana Wang, Jinan Fiaidhi, Sabah Mohammed, Libo Chen* and Li Ling
Pages: 1-11 (11)
Sequence-Based Structural B-cell Epitope Prediction by Using Two Layer SVM Model and Association Rule Features

Author(s): Jehn-Hwa Kuo, Chi-Chang Chang*, Chi-Wei Chen, Heng-Hao Liang, Chih-Yen Chang and Yen-Wei Chu*
Pages: 1-7 (7)

E-Pub Full Text Articles

The Expression Profiles of lncRNAs and their Regulatory Network During Smek1/2 Knockout Mouse Neural Stem Cells Differentiation

MSIT: Malonylation Sites Identification Tree

A Review of Pathway Databases and Related Methods Analysis

SimExact – An Efficient Method To Compute Function Similarity Between Proteins Using Gene Ontology

A Survey of Metrics Measuring Difference for Rooted Phylogenetic Trees

Lung Cancer Classification and Gene Selection by Combining Affinity Propagation Clustering and Sparse Group Lasso

ZFARED: A Database of the Antioxidant Response Elements in zebrafish

Whole Aegilops tauschii Transcriptome Investigation Revealed Nine Novel miRNAs Involved in Stress Response

Complex Networks, Gene Expression and Cancer Complexity: A Brief Review of Methodology and Applications

Finding Community of Brain Networks Based on Neighbor Index and DPSO with Dynamic Crossover

Application of a Deep Matrix Factorization Model on Integrated Gene Expression Data

A Machine Learning-based Diagnosis of Thyroid Cancer Using Thyroid Nodules Ultrasound Images

Elucidating the Functional Role of Predicted miRNAs in Post- Transcriptional Gene Regulation Along with Symbiosis in Medicago truncatula

High-dimensional Causal Mediation Analysis with a Large Number of Mediators Clumping at Zero to Assess the Contribution of the Microbiome to the Risk of Bacterial Pathogen Colonization in Older Adults

White Blood Cell Image Segmentation based on Color Component Combination and Contour Fitting

Using the Chou’s Pseudo Component to Predict the ncRNA Locations Based on the Improved K-nearest Neighbor (iKNN) Classifier

A Study on Host Tropism Determinants of Influenza Virus using Machine Learning

Docking Techniques in Toxicology: An Overview

Comparative Transcriptome Profiling of Disruptive Technology, Single- Molecule Direct RNA Sequencing

Protein Secondary Structure Prediction: A Review of Progress and Directions

Analysis and Comparison of RNA Pseudouridine Site Prediction Tools

Analysis of the Epigenetic Signature of Cell Reprogramming by Computational DNA Methylation Profiles

Integrating Second-order Moving Average and Over-sampling Algorithm to Predict Apoptosis Protein Subcellular Localization

Prediction of RNA Secondary Structure Using Quantum-inspired Genetic Algorithms

The Human OncoBiome Database: A Database of Cancer Microbiome Datasets

Current State of the Art for Survival Prediction in Cancer Using Data Mining Techniques

Leukocyte Image Segmentation Based on Adaptive Histogram Thresholding and Contour Detection

Predicting LncRNA Subcellular Localization Using Unbalanced Pseudo-k Nucleotide Compositions

Integrated in silico Analysis to Study the Role of microRNAs in the Detection of Chronic Kidney Diseases

Improving Multi-type Gram-negative Bacterial Secreted Protein Prediction via Protein Evolutionary Information and Feature Ranking

Predicting Protein Phosphorylation Sites Based on Deep Learning

An in silico Immunogenicity Analysis for PbHRH: An Antiangiogenic Peptibody by fusing HRH Peptide and Human IgG1 Fc Fragment

Identification of Lysine Carboxylation Sites in Proteins by Integrating Statistical Moments and Position Relative Features via General PseAAC

MD-LBP: An Efficient Computational Model for Protein Subcellular Localization from HeLa Cell Lines using SVM

Identification of Cancerlectins by Using Cascade Linear Discriminant Analysis and Optimal g-gap Tripeptide Composition

Analysis of Germin-Like Protein Genes (OsGLPs) Family in Rice Using Various In Silico Approaches

Research on Gastric Cancer’s Drug-Resistant Gene Regulatory Network Model

Integration and Querying of Heterogeneous Omics Semantic Annotations for Biomedical and Biomolecular Knowledge Discovery

ESDA: An Improved Approach to Accurately Identify Human snoRNAs for Precision Cancer Therapy

Computational Approaches for Transcriptome Assembly Based on Sequencing Technologies

Natural Scene Nutrition Information Acquisition and Analysis Based on Deep Learning

A Comparative Study to Explore the Effect of Different Compounds in Immune Proteins of Human Beings Against Tuberculosis: An In-Silico Approach

Predicting Drug-target Interactions via FM-DNN Learning

HSEAT: A Tool for Plant Heat Shock Element Analysis, Motif Identification and Analysis

Elastic Net Regularized Softmax Regression Methods for Multi-subtype Classification in Cancer

Clinical Pathways Optimization from Decision Rules Based on Fusion Stream Mining and Fuzzy Unordered Rule Induction Strategy in Diabetes Treatment

Sequence-Based Structural B-cell Epitope Prediction by Using Two Layer SVM Model and Association Rule Features