E-Pub Full Text Articles

Analysis of the Salivary Microbiome in the Periodontal Disease Patients with Hypertension and Non-hypertension

Author(s): Suhua Li, Rexidan Zaker, Xueqian Chu, Reyida Asihati, Chong Li, Xin Guo, Palidan Jila and Xiaohong Sang*
Pages: 1-10 (10)
Scaling Method for Batch Effect Correction of Gene Expression Data Based on Spectral Clustering

Author(s): Momo Matsuda*, Xiucai Ye and Tetsuya Sakurai
Pages: 1-7 (7)
Toll-like Receptor 4 Gene Polymorphisms in Chinese Population after Allogeneic Hematopoietic Stem Cell Transplantation

Author(s): Yi Zhao, Yujie Zhang, Jie Zhou, Lijuan Wang, Jimin Shi, Yamin Tan, Yi Luo, He Huang and Zhen Cai*
Pages: 1-5 (5)
A Constrained Probabilistic Matrix Decomposition Method for Predicting miRNA-disease Associations

Author(s): Xinguo Lu, Yan Gao, Zhenghao Zhu*, Li Ding, Xinyu Wang, Fang Liu and Jinxin Li
Pages: 1-10 (10)
HAMP: A Knowledgebase of Antimicrobial Peptides from Human Microbiome

Author(s): Viswajit Mulpuru, Rahul Semwal, Pritish Kumar Varadwaj and Nidhi Mishra*
Pages: 1-7 (7)
A Mini-Review of Computational Approaches to Predict Functions and Findings of Novel Micro Peptides

Author(s): Mohsin Ali Nasir, Jian Huang* and Samia Nawaz
Pages: 1-9 (9)
Construction and analysis of mRNA and lncRNA regulatory networks reveal the key genes associated with prostate cancer related fatigue during localized radiation therapy

Author(s): Yechen Wu, Yaping Gui, Denglong Wu and Qiang Wu*
Pages: 1-10 (10)
Continual Cough: Experience and Lessons from a Case of Bronchial Adenoid Cystic Carcinoma

Author(s): Lin Sheng, Junwei Tu, Yijun Sheng, Jingqian Zhu, Huijun Chen, Jianghua Tian, Lixia Wang and Chuli Pan*
Pages: 1-8 (8)
ModStore:Genotype Imputationasa Service Powered by SG10K Reference Panel

Author(s): Weiwen Zhang*, Long Wang and Theint Theint Aye
Pages: 1-10 (10)
Bioinformatics tools and Databases for Genomics Assisted Breeding and Population Genetics of Plants: A Review

Author(s): Supriya Babasaheb Aglawe*, Amit Kumar Verma and Atul Kumar Upadhyay*
Pages: 1-10 (10)
An Automated Model for Target Protein prediction in PPI

Author(s): G. Naveen Sundar and D. Narmadha*
Pages: 1-12 (12)
Bio-analytical Identification of Key Genes that Could Contribute to the Progression and Metastasis of Osteosarcoma

Author(s): Fei Wang, Guoqing Qin, Junzhi Liu, Xiunan Wang and Baoguo Ye*
Pages: 1-9 (9)
The Prospect of Bioactive Peptide Research: A Review on Databases and Tools

Author(s): FanYi Dong, GuiLing Zhao, Huige Tong, Zhenyuan Zhang, Xingzhen Lao and Heng Zheng*
Pages: 1-12 (12)
Potentiality of Risk SNPs Identification Based on GSP Theory

Author(s): Hengyi Zhang and Qinli Zhang*
Pages: 1-12 (12)
Incorporating K-mers Highly Correlated to Epigenetic Modifications for Bayesian Inference of Gene Interactions

Author(s): Dariush Salimi* and Ali Moeini
Pages: 1-9 (9)
Virtual Screening of Acetylcholinesterase Inhibitors Based on Machine Learning Combined with Molecule Docking Methods

Author(s): Jinyu Yan, Weiguang Huang, Chi Zhang*, Haizhong Huo and Fuxue Chen
Pages: 1-9 (9)
Predicting Hub Genes of Glioblastomas Based on Support Vector Machine Combined with CFS algorithms

Author(s): Chun Qiu*, Sai Li, Shenghui Yang, Lin Wang, Aihui Zeng and Xufeng Zhang
Pages: 1-9 (9)
Transcriptome Analysis Reveals Possible Virulence Factors of Paragonimus Proliferus

Author(s): Sheng-hao Li, Shu-de Li, Kun-li Wu, Jun-Yi Li, Hong-juan Li, Wei-qun Wang, Li-jun Yang, Jing-jing Xu, Guo-ji Chang, Yan-ling Zhang, Qiu-hong Shu, Shan-shan Zhuang, Zhi-qiang Ma, Shu-Meiqi He, Min Zhu, Wen-lin Wang* and Hong-li Huang
Pages: 1-10 (10)
Application of Machine Learning in Animal Disease Analysis and Prediction

Author(s): Shuwen Zhang, Qiang Su* and Qin Chen
Pages: 1-11 (11)
Bioinformatics Analysis Reveals Centromere Protein K Can Serve as Potential Prognostic Biomarker and Therapeutic Target for Non-small Cell Lung Cancer

Author(s): Yimin Luo, Xihua Wang, Li Li, Qun Wang, Yue Hu, Can He and Mei Zhang*
Pages: 1-14 (14)
New Trends of Deep Learning in Clinical Cardiology

Author(s): Zichao Chen, Qi Zhou, Aziz Khan Turlandi, Jordan Jill, Rixin Xiong and Xu Liu*
Pages: 1-9 (9)
Extracting Gradual Rules to Reveal Regulation between Genes

Author(s): Manel Gouider*, Ines Hamdi and Henda Ben Ghezala
Pages: 1-11 (11)
An Unbiased Predictive Model to Detect DNA Methylation Propensity of CpG Islands in the Human Genome

Author(s): Dicle Yalcin and Hasan H. Otu*
Pages: 1-18 (18)
A Computational Framework to Identify Cross Association between Complex Disorders by Protein-Protein Interaction Network Analysis

Author(s): Nikhila T Suresh*, Vimina E R and U. Krishnakumar
Pages: 1-13 (13)
Characterization and Prediction of Presynaptic and Postsynaptic Neurotoxins Based on Reduced Amino Acids and Biological Properties

Author(s): Yiyin Cao, Chunlu Yu, Shenghui Huang, Shiyuan Wang, Yongchun Zuo and Lei Yang*
Pages: 1-7 (7)
Delineating Characteristic Sequence and Structural Features of Precursor and Mature Piwi-interacting RNAs of Epithelial Ovarian Cancer

Author(s): Garima Singh, Arpit Chandan Swain and Bibekanand Mallick*
Pages: 1-12 (12)
Identification of key lncRNAs and mRNAs Associated with Oral Squamous Cell Carcinoma Progression

Author(s): Ju Li, Congcong Zhang, Yang Shi, Qing Li, Na Li and Yong Mi*
Pages: 1-9 (9)
Colorectal Cancer Classification and Survival Analysis Based on an Integrated RNA and DNA Molecular Signature

Author(s): Mohanad Mohammed*, Henry Mwambi and Bernard Omolo
Pages: 1-18 (18)
Gene Set Correlation Analysis and Visualization Using Gene Expression Data

Author(s): Chen-An Tsai* and James J. Chen
Pages: 1-16 (16)
Identification of Critical Functional Modules and Signaling Pathways in Osteoporosis

Author(s): Xiaowei Jiang, Pu Ying, Yingchao Shen, Yiming Miu, Wenbin Kong, Tong Lu and Qiang Wang*
Pages: 1-8 (8)
Introduction of Advanced Methods for Structure-based Drug Discovery

Author(s): Bilal Shaker, Kha Mong Tran, Chanjin Jung and Dokyun Na*
Pages: 1-13 (13)
Deep-BSC: Predicting Raw DNA Binding Pattern in Arabidopsis Thaliana

Author(s): Syed Adnan Shah Bukhari, Abdul Razzaq*, Javeria Jabeen, Shaheer Khan and Zulqurnain Khan
Pages: 1-8 (8)
An Ensembled SVM Based Approach For Predicting Adverse Drug Reactions

Author(s): Pratik Joshi*, V Masilamani and Raj Ramesh
Pages: 1-11 (11)
Deep Learning Model for Pathogen Classification Using Feature Fusion and Data Augmentation

Author(s): Fareed Ahmad*, Amjad Farooq and Muhammad Usman Ghani Khan
Pages: 1-17 (17)
Fusing Multiple Biological Networks to Effectively Predict miRNA-disease Associations

Author(s): Qingqi Zhu, Yongxian Fan* and Xiaoyong Pan
Pages: 1-13 (13)
PoGB-Pred: Prediction of Antifreeze Proteins Sequences Using Amino Acid Composition with Feature Selection Followed by a Sequential-based Ensemble Approach

Author(s): Affan Alim*, Abdul Rafay and Imran Naseem
Pages: 1-10 (10)
NPalmitoylDeep-PseAAC: A Predictor of N-Palmitoylation sites in Proteins using Deep Representations of Proteins and PseAAC via Modified 5-steps Rule

Author(s): Sheraz Naseer*, Waqar Hussain, Yaser Daanial Khan and Nouman Rasool
Pages: 1-12 (12)
Bioinformatics Analysis Identifies CPZ as a Tumor Immunology Biomarker For Gastric Cancer

Author(s): Yuan Gu*, Ying Gao, Xiaodan Tang, Huizhong Xia and Kunhe Shi
Pages: 1-8 (8)
Comprehensive Analysis Reveals GPRIN1 is a Potential Biomarker for non-small Cell Lung Cancer

Author(s): Jian Li*, Zheng Gong, Haicheng Jiang, Jie Gao, Jianwei Liang, Peng Chang and Yulong Hou
Pages: 1-8 (8)
The Power of Matrix Factorization: Methods for Deconvoluting Genetic Heterogeneous Data at Expression Level

Author(s): Yuan Liu, Zhining Wen and Menglong Li*
Pages: 1-13 (13)
Exploring MiRNA Sponge Networks of breast cancer by Combining miRNA-disease-lncRNA and miRNA-target Networks

Author(s): Lei Tian and Shu-Lin Wang*
Pages: 1-10 (10)
Discovery of Biomarkers in Hepatocellular Carcinoma Metastasis Using Bioinformatic Analysis

Author(s): Jinrui Wei, Haroon ur Rashid and Lichuan Wu*
Pages: 1-11 (11)
SNPs of Metabolic Syndrome are Associated with Benign Prostatic Hyperplasia Development and Progression in Chinese Population

Author(s): Ding Xu*, Xiaolin Lin, Xiaoqiang Qian and Jun Qi
Pages: 1-8 (8)
MK-FSVM-SVDD: A Multiple Kernel-based Fuzzy SVM Model for Predicting DNA-binding Proteins via Support Vector Data Description

Author(s): Yi Zou, Hongjie Wu, Xiaoyi Guo, Li Peng, Yijie Ding*, Jijun Tang and Fei Guo
Pages: 1-10 (10)
Detection of Hepatitis B virus-associated Hepatocellular Carcinoma Disease Using Hybrid Hierarchical k-Means Clustering and SVM Algorithm

Author(s): Lailil Muflikhah*, Nashi Widodo, Wayan Firdaus Mahmudy and Solimun
Pages: 1-9 (9)
An Efficient Multiple Kernel Support Vector Regression Model for Assessing Dry Weight of Hemodialysis Patients

Author(s): Xiaoyi Guo, Wei Zhou, Bin Shi, Xiaohua Wang, Aiyan Du, Yijie Ding, Jijun Tang and Fei Guo*
Pages: 1-13 (13)
Analysis of Codon Usage Patterns in the Human Papillomavirus Oncogenes

Author(s): Myeongji Cho, Hayeon Kim, Mikyeong Je and Hyeon S. Son*
Pages: 1-11 (11)
A Machine Learning-Based Self-Risk Assessment Technique for Cervical Cancer

Author(s): Zeeshan Ramzan*, Muhammad Awais Hassan, H. M. Shahzad Asif and Amjad Farooq
Pages: 1-18 (18)
Clin-mNGS: Automated Pipeline for Pathogen Detection from Clinical Metagenomic Data

Author(s): Akshatha Prasanna* and Vidya Niranjan
Pages: 1-9 (9)
Esreem: Efficient Short Reads Error Estimation Computational Model for Next-Generation Genome Sequencing

Author(s): Muhammad Tahir, Muhammad Sardaraz*, Zahid Mehmood and Muhammad Saud Khan
Pages: 1-11 (11)
Identification of key mRNAs and lncRNAs Associated with the Effects of anti-TWEAK on Osteosarcoma

Author(s): Mingxuan Yang, Liangtao Zhao, Xuchang Hu, Haijun Feng and Xuewen Kang*
Pages: 1-8 (8)
Whole-Exome Sequencing of Tumor-only Samples Reveals the Association between Somatic Alterations and Clinical Features in Pancreatic Cancer

Author(s): Wenwen Ran, Xiangbin Chen , Bo Wang, Ping Yang, Yongxing Li, Yujing Xiao, Xiaonan Wang, Guangqi Li, Lili Wang, Yingmin Han, Yonggang Peng, Jidong Lang, Yuebin Liang, Yupei Xiao, Qingqing Lu*, Huixin Lin , Geng Tian, Dawei Yuan, Chaoyang Deng, Jialiang Yang and Xiaoming Xing
Pages: 1-8 (8)
Robust Transcription Factor Binding Site Prediction Using Deep Neural Networks

Author(s): Kanu Geete* and Manish Pandey
Pages: 1-16 (16)
Comprehensive Analysis of key Proteins Involved in Radioresistance of Prostate Cancer by Integrating Protein-protein Interaction Networks

Author(s): Duocheng Qian*, Quan Li, Yansong Zhu and Dujian Li
Pages: 1-7 (7)
Classifying Cognitive Normal and Early Mild Cognitive Impairment of Alzheimer’s Disease by Applying Restricted Boltzmann Machine to fMRI Data

Author(s): Shengbing Pei and Jihong Guan*
Pages: 1-9 (9)
Identification of key mRNAs, miRNAs, and mRNA-miRNA Network Involved in Papillary Thyroid Carcinoma

Author(s): Wei Han, Dongchen Lu, Chonggao Wang, Mengdi Cui and Kai Lu*
Pages: 1-8 (8)
Protein Secondary Structure Prediction using Character n-gram Embedding and Bi-LSTM

Author(s): Ashish Kumar Sharma* and Rajeev Srivastava
Pages: 1-6 (6)
Integrative Analysis of miRNA-mediated Competing Endogenous RNA Network Reveals the lncRNAs-mRNAs Interaction in Glioblastoma Stem Cell Differentiation

Author(s): Zhenyu Zhao, Cheng Zhang, Mi Li*, Xinguang Yu, Hailong Liu, Jian Wang, Qi Chen, Shaopin Shen and Jingjing Jiang
Pages: 1-10 (10)
Identification of Carcinogenic Chemicals with Network Embedding Deep Learning Methods

Author(s): Xuefei Peng, Lei Chen* and Jian-Peng Zhou
Pages: 1-10 (10)
Salient Features, Data and Algorithms for microRNA Screening from Plants: A Review on the Gains and Pitfalls of Machine Learning Techniques

Author(s): Garima Ayachit, Inayatullah Shaikh, Himanshu Pandya and Jayashankar Das*
Pages: 1-13 (13)
Bioluminescent Proteins Prediction with Voting Strategy

Author(s): Shulin Zhao, Ying Ju, Xiucai Ye, Jun Zhang* and Shuguang Han
Pages: 1-12 (12)
A Review on the Application of Deep Learning in Bioinformatics

Author(s): Yongqing Zhang, Jianrong Yan, Siyu Chen, Meiqin Gong, Dongrui Gao, Min Zhu* and Wei Gan
Pages: 1-16 (16)
Genome-Wide Identification of differently expressed lncRNAs, mRNAs, and circRNAs in patients with osteoarthritis

Author(s): Yeqing Sun*, Lei Chen, Yingqi Zhang, Jincheng Zhang and Shashi Ranjan Tiwari
Pages: 1-10 (10)
Multi-label Learning for Diagnosis of Cancer and Identification of Novel Biomarkers with High-Throughput Omics

Author(s): Shicai Liu, Hailin Tang, Hongde Liu and Jinke Wang*
Pages: 1-14 (14)
Bayesian Functional Mixed-effects Models with Grouped Smoothness for Analyzing Time-course Gene Expression Data

Author(s): Shangyuan Ye, Ye Liang and Bo Zhang*
Pages: 1-11 (11)
Detecting TYMS Tandem Repeat Polymorphism by the PSSD Method Based on Next-Generation Sequencing

Author(s): Binsheng He, Jialiang Yang, Geng Tian, Pingping Bing and Jidong Lang*
Pages: 1-7 (7)
A Review on the Methods of Peptide-MHC Binding Prediction

Author(s): Yang Liu, Xia-hui Ouyang, Zhi-Xiong Xiao, Le Zhang and Yang Cao*
Pages: 1-11 (11)
Bioinformatics Analysis and Validation of Differentially Expressed MicroRNAs with Their Target Genes Involved in GLP-1RA Facilitated Osteogenesis

Author(s): Na Wang, Yukun Li, Sijing Liu, Liu Gao, Chang Liu, Xiaoxue Bao and Peng Xue*
Pages: 1-15 (15)
MRMD2.0: A Python Tool for Machine Learning with Feature Ranking and Reduction

Author(s): Shida He, Fei Guo, Quan Zou* and Hui Ding
Pages: 1-9 (9)
An Algorithm to Improve the Speed of Semi- and Non-Specific Enzyme Searches in Proteomics

Author(s): Zach Rolfs, Robert J. Millikin and Lloyd M. Smith*
Pages: 1-9 (9)
GASPIDs versus Non-GASPIDs - Differentiation Based on Machine Learning Approach

Author(s): Fawad Ahmad, Saima Ikram, Jamshaid Ahmad*, Waseem Ullah, Fahad Hassan, Saeed Ullah Khattak and Irshad Ur Rehman
Pages: 1-10 (10)
A Review of Protein Inter-Residue Distance Prediction

Author(s): He Huang and Xinqi Gong*
Pages: 1-10 (10)
Sequence-Based Identification of Allergen Proteins Developed by Integration of PseAAC and Statistical Moments via 5-Step Rule

Author(s): Yaser Daanial Khan*, Ebraheem Alzahrani, Wajdi Alghamdi and Malik Zaka Ullah
Pages: 1-10 (10)
Multi-level Parallelization of Genotype Imputation on Supercomputers

Author(s): Weiwen Zhang*, Long Wang, Theint Theint Aye, Juniarto Samsudin and Yongqing Zhu
Pages: 1-9 (9)
Supervised Learning in Spiking Neural Networks with Synaptic Delay Plasticity: An Overview

Author(s): Yawen Lan and Qiang Li*
Pages: 1-12 (12)
An Overview of Abdominal Multi-Organ Segmentation

Author(s): Qiang Li, Hong Song*, Lei Chen, Xianqi Meng, Jian Yang and Le Zhang
Pages: 1-12 (12)
Identification of Glioma Specific Genes as Diagnostic and Prognostic Markers for Glioma

Author(s): Ming Tu, Ling Ye, ShaoBo Hu, Wei Wang, Penglei Zhu, XiangHe Lu and WeiMing Zheng*
Pages: 1-10 (10)
Using Bioinformatics to Quantify the Variability and Diversity of the Microbial Community Structure in Pond Ecosystems of a Subtropical Catchment

Author(s): Jiangen Zhou*, Yang Wang and Qiuliang Lei
Pages: 1-9 (9)
High-density Genetic Linkage Map Construction in Sunflower (Helianthus annuus L.) Using SNP and SSR Markers

Author(s): Pin Lyu*, Jianhua Hou, Haifeng Yu and Huimin Shi
Pages: 1-9 (9)
Stochastic Neighbor Embedding Algorithm and Its Application in Molecular Biological Data

Author(s): Pan Wang, Guiyang Zhang, You Li, Ammar Oad and Guohua Huang*
Pages: 1-8 (8)
Quantum Patterns of Genome Size Variation in Angiosperms

Author(s): Liaofu Luo and Lirong Zhang*
Pages: 1-10 (10)
Comprehensive Analysis of Features and Annotations of Pathway Databases

Author(s): Ali Ghulam, Xiujuan Lei*, Min Guo and Chen Bian
Pages: 1-18 (18)
Distinguishing Enzymes and Non-Enzymes Based on Structural Information with an Alignment Free Approach

Author(s): Lifeng Yang and Xiong Jiao *
Pages: 1-9 (9)
Withdrawal Notice: Clinical Pathways Optimization from Decision Rules Based on Fusion Stream Mining and Fuzzy Unordered Rule Induction Strategy in Diabetes Treatment

Author(s): Simon Fong, Dana Wang, Jinan Fiaidhi, Sabah Mohammed, Libo Chen* and Li Ling
Pages: 1-1 (1)
A Simple Protein Evolutionary Classification Method Based on the Mutual Relations Between Protein Sequences

Author(s): Xiaogeng Wan* and Xinying Tan
Pages: 1-17 (17)
Biomarker Identification for Liver Hepatocellular Carcinoma and Cholangiocarcinoma Based on Gene Regulatory Network Analysis

Author(s): Qiuyan Huo, Yuying Ma, Yu Yin and Guimin Qin*
Pages: 1-13 (13)
IsoDetect: Detection of Splice Isoforms from Third Generation Long Reads Based on Short Feature Sequences

Author(s): Hongdong Li, Wenjing Zhang , Yuwen Luo and Jianxin Wang *
Pages: 1-10 (10)
A Novel Hybrid Filter/Wrapper Feature Selection Approach based on Improved Fruit Fly Optimization Algorithm and Chi-square Test for High Dimensional Microarray Data

Author(s): Chaokun Yan, Jingjing Ma , Bin Wu , Jianlin Wang, Ge Zhang, Junwei Luo and Huimin Luo *
Pages: 1-17 (17)
A Novel Method for Microsatellite Instability Detection by Liquid Biopsy Based on Next-Generation Sequencing

Author(s): Zheng Jiang, Hui Liu , Siwen Zhang , Jia Liu , Weitao Wang, Guoliang Zang, Bo Meng , Huixin Lin, Jichuan Quan , Shuangmei Zou , Dawei Yuan*, Xishan Wang, Geng Tian and Jidong Lang
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Artificial Neural Network Models for Coronary Artery Disease

Author(s): Elham Shamsara, Sara Saffar Soflaei, Mohammad Tajfard, Ivan Yamshchikov, Habibollah Esmaili, Maryam Saberi-Karimian, Hamideh Ghazizadeh, Seyed Reza Mirhafez, Zahra Farjami, Gordon A. Ferns and Majid Ghayour-Mobarhan*
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Identification of Most Relevant Features for Classification of Francisella tularensis using Machine Learning

Author(s): Fareed Ahmad*, Amjad Farooq, Muhammad Usman Ghani Khan, Muhammad Zubair Shabbir, Masood Rabbani and Irshad Hussain
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Predicting lncRNA-Protein Interactions by Machine Learning Methods: A Review

Author(s): Zhi-Ping Liu*
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Deep Novo A+: Improving the Deep Learning Model for De Novo Peptide Sequencing with Additional Ion Types and Validation Set

Author(s): Lei Di, Yongxing He and Yonggang Lu*
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Classification of Chromosomal DNA Sequences Using Hybrid Deep Learning Architectures

Author(s): Zhihua Du, Xiangdong Xiao and Vladimir N. Uversky*
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Comparisons of microRNA Set Enrichment Analysis Tools on Cancer De-Regulated miRNAs from TCGA Expression Datasets

Author(s): Jianwei Li, Leibo Liu, Qinghua Cui and Yuan Zhou*
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Feature Selection Algorithm for High-dimensional Biomedical Data using Information Gain and Improved Chemical Reaction Optimization

Author(s): Ge Zhang, Pan Yu , Jianlin Wang* and Chaokun Yan*
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Bioinformatics Analysis Reveals Functions of MicroRNAs in Rice Under the Drought Stress

Author(s): Yan Peng, Yuewu Liu* and Xinbo Chen
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Identifying Breast Cancer-induced Gene Perturbations and its Application in Guiding Drug Repurposing

Author(s): Jujuan Zhuang, Shuang Dai, Lijun Zhang, Pan Gao, Yingmin Han, Geng Tian, Na Yan, Min Tang and Ling Kui*
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Identification of Genomic Islands in Synechococcus sp. WH8102 Using Genomic Barcode and Whole-Genome Microarray Analysis

Author(s): Jiahui Pan, Xizi Luo, Tong Shao, Chaoying Li, Tingting Zhao, Shiwei Zhang, Fengfeng Zhou and Guoqing Wang*
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Cancer Diagnosis and Disease Gene Identification via Statistical Machine Learning

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Densely Dilated Spatial Pooling Convolutional Network using Benign Loss Functions for Imbalanced Volumetric Prostate Segmentation

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Formalization and Semantic Integration of Heterogeneous Omics Annotations for Exploratory Searches

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Sequence-based Identification of Arginine Amidation Sites in Proteins Using Deep Representations of Proteins and PseAAC

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Exploiting XG Boost For Predicting Enhancer-Promoter Interactions

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A Deep Convolutional Neural Network to Improve the Prediction of Protein Secondary Structure

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Aggregation Prone Regions in Antibody Sequences Raised Against Vibrio cholerae: A Bioinformatic Approach

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A Drug Target Interaction Prediction based on LINE-RF Learning

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E-Pub Full Text Articles

Analysis of the Salivary Microbiome in the Periodontal Disease Patients with Hypertension and Non-hypertension

Scaling Method for Batch Effect Correction of Gene Expression Data Based on Spectral Clustering

Toll-like Receptor 4 Gene Polymorphisms in Chinese Population after Allogeneic Hematopoietic Stem Cell Transplantation

A Constrained Probabilistic Matrix Decomposition Method for Predicting miRNA-disease Associations

HAMP: A Knowledgebase of Antimicrobial Peptides from Human Microbiome

A Mini-Review of Computational Approaches to Predict Functions and Findings of Novel Micro Peptides

Construction and analysis of mRNA and lncRNA regulatory networks reveal the key genes associated with prostate cancer related fatigue during localized radiation therapy

Continual Cough: Experience and Lessons from a Case of Bronchial Adenoid Cystic Carcinoma

ModStore:Genotype Imputationasa Service Powered by SG10K Reference Panel

Bioinformatics tools and Databases for Genomics Assisted Breeding and Population Genetics of Plants: A Review

An Automated Model for Target Protein prediction in PPI

Bio-analytical Identification of Key Genes that Could Contribute to the Progression and Metastasis of Osteosarcoma

The Prospect of Bioactive Peptide Research: A Review on Databases and Tools

Potentiality of Risk SNPs Identification Based on GSP Theory

Incorporating K-mers Highly Correlated to Epigenetic Modifications for Bayesian Inference of Gene Interactions

Virtual Screening of Acetylcholinesterase Inhibitors Based on Machine Learning Combined with Molecule Docking Methods

Predicting Hub Genes of Glioblastomas Based on Support Vector Machine Combined with CFS algorithms

Transcriptome Analysis Reveals Possible Virulence Factors of Paragonimus Proliferus

Application of Machine Learning in Animal Disease Analysis and Prediction

Bioinformatics Analysis Reveals Centromere Protein K Can Serve as Potential Prognostic Biomarker and Therapeutic Target for Non-small Cell Lung Cancer

New Trends of Deep Learning in Clinical Cardiology

Extracting Gradual Rules to Reveal Regulation between Genes

An Unbiased Predictive Model to Detect DNA Methylation Propensity of CpG Islands in the Human Genome

A Computational Framework to Identify Cross Association between Complex Disorders by Protein-Protein Interaction Network Analysis

Characterization and Prediction of Presynaptic and Postsynaptic Neurotoxins Based on Reduced Amino Acids and Biological Properties

Delineating Characteristic Sequence and Structural Features of Precursor and Mature Piwi-interacting RNAs of Epithelial Ovarian Cancer

Identification of key lncRNAs and mRNAs Associated with Oral Squamous Cell Carcinoma Progression

Colorectal Cancer Classification and Survival Analysis Based on an Integrated RNA and DNA Molecular Signature

Gene Set Correlation Analysis and Visualization Using Gene Expression Data

Identification of Critical Functional Modules and Signaling Pathways in Osteoporosis

Introduction of Advanced Methods for Structure-based Drug Discovery

Deep-BSC: Predicting Raw DNA Binding Pattern in Arabidopsis Thaliana

An Ensembled SVM Based Approach For Predicting Adverse Drug Reactions

Deep Learning Model for Pathogen Classification Using Feature Fusion and Data Augmentation

Fusing Multiple Biological Networks to Effectively Predict miRNA-disease Associations

PoGB-Pred: Prediction of Antifreeze Proteins Sequences Using Amino Acid Composition with Feature Selection Followed by a Sequential-based Ensemble Approach

NPalmitoylDeep-PseAAC: A Predictor of N-Palmitoylation sites in Proteins using Deep Representations of Proteins and PseAAC via Modified 5-steps Rule

Bioinformatics Analysis Identifies CPZ as a Tumor Immunology Biomarker For Gastric Cancer

Comprehensive Analysis Reveals GPRIN1 is a Potential Biomarker for non-small Cell Lung Cancer

The Power of Matrix Factorization: Methods for Deconvoluting Genetic Heterogeneous Data at Expression Level

Exploring MiRNA Sponge Networks of breast cancer by Combining miRNA-disease-lncRNA and miRNA-target Networks

Discovery of Biomarkers in Hepatocellular Carcinoma Metastasis Using Bioinformatic Analysis

SNPs of Metabolic Syndrome are Associated with Benign Prostatic Hyperplasia Development and Progression in Chinese Population

MK-FSVM-SVDD: A Multiple Kernel-based Fuzzy SVM Model for Predicting DNA-binding Proteins via Support Vector Data Description

Detection of Hepatitis B virus-associated Hepatocellular Carcinoma Disease Using Hybrid Hierarchical k-Means Clustering and SVM Algorithm

An Efficient Multiple Kernel Support Vector Regression Model for Assessing Dry Weight of Hemodialysis Patients

Analysis of Codon Usage Patterns in the Human Papillomavirus Oncogenes

A Machine Learning-Based Self-Risk Assessment Technique for Cervical Cancer

Clin-mNGS: Automated Pipeline for Pathogen Detection from Clinical Metagenomic Data

Esreem: Efficient Short Reads Error Estimation Computational Model for Next-Generation Genome Sequencing

Identification of key mRNAs and lncRNAs Associated with the Effects of anti-TWEAK on Osteosarcoma

Whole-Exome Sequencing of Tumor-only Samples Reveals the Association between Somatic Alterations and Clinical Features in Pancreatic Cancer

Robust Transcription Factor Binding Site Prediction Using Deep Neural Networks

Comprehensive Analysis of key Proteins Involved in Radioresistance of Prostate Cancer by Integrating Protein-protein Interaction Networks

Classifying Cognitive Normal and Early Mild Cognitive Impairment of Alzheimer’s Disease by Applying Restricted Boltzmann Machine to fMRI Data

Identification of key mRNAs, miRNAs, and mRNA-miRNA Network Involved in Papillary Thyroid Carcinoma

Protein Secondary Structure Prediction using Character n-gram Embedding and Bi-LSTM

Integrative Analysis of miRNA-mediated Competing Endogenous RNA Network Reveals the lncRNAs-mRNAs Interaction in Glioblastoma Stem Cell Differentiation

Identification of Carcinogenic Chemicals with Network Embedding Deep Learning Methods

Salient Features, Data and Algorithms for microRNA Screening from Plants: A Review on the Gains and Pitfalls of Machine Learning Techniques

Bioluminescent Proteins Prediction with Voting Strategy

A Review on the Application of Deep Learning in Bioinformatics

Genome-Wide Identification of differently expressed lncRNAs, mRNAs, and circRNAs in patients with osteoarthritis

Multi-label Learning for Diagnosis of Cancer and Identification of Novel Biomarkers with High-Throughput Omics

Bayesian Functional Mixed-effects Models with Grouped Smoothness for Analyzing Time-course Gene Expression Data

Detecting TYMS Tandem Repeat Polymorphism by the PSSD Method Based on Next-Generation Sequencing

A Review on the Methods of Peptide-MHC Binding Prediction

Bioinformatics Analysis and Validation of Differentially Expressed MicroRNAs with Their Target Genes Involved in GLP-1RA Facilitated Osteogenesis

MRMD2.0: A Python Tool for Machine Learning with Feature Ranking and Reduction

An Algorithm to Improve the Speed of Semi- and Non-Specific Enzyme Searches in Proteomics

GASPIDs versus Non-GASPIDs - Differentiation Based on Machine Learning Approach

A Review of Protein Inter-Residue Distance Prediction

Sequence-Based Identification of Allergen Proteins Developed by Integration of PseAAC and Statistical Moments via 5-Step Rule

Multi-level Parallelization of Genotype Imputation on Supercomputers

Supervised Learning in Spiking Neural Networks with Synaptic Delay Plasticity: An Overview

An Overview of Abdominal Multi-Organ Segmentation

Identification of Glioma Specific Genes as Diagnostic and Prognostic Markers for Glioma

Using Bioinformatics to Quantify the Variability and Diversity of the Microbial Community Structure in Pond Ecosystems of a Subtropical Catchment

High-density Genetic Linkage Map Construction in Sunflower (Helianthus annuus L.) Using SNP and SSR Markers