E-Pub Full Text Articles

Information Fusion in Biological Network Inference

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Pages: 1-10 (10)
RGDtrip: A Database for the Investigation of Proteins Containing the RGD Tripeptide

Author(s): Yiannis . Hatzis, Trias Thireou, Emmanouil Viennas, Vassilis Atlamazoglou, George K. Papadopoulos, Konstantinos Poulas, Elias Eliopoulos and Giannis Tzimas
Pages: 1-11 (11)
A Pipeline Architecture for Inferring and Visualizing Gene Networks from cDNA Microarray Expression Data in Crop Plants

Author(s): Guillermo Calderón-Mantilla, Alvaro Gaitan-Bustamante and Luis Fernando Castillo-Ossa
Pages: 1-7 (7)
Adaptive Genetic Algorithm with Exploration-Exploitation Tradeoff for Preprocessing Microarray Datasets

Author(s): Sivaraj Rajappan and DeviPriya Rangasamy
Pages: 1-11 (11)
Indole Alkaloids as New Leads for the Design and Development of Novel DPP-IV Inhibitors for the Treatment of Diabetes

Author(s): Kannan Narayanan Dhiraviam, Suganthana Balasubramanian and Sridhar Jayavel
Pages: 1-13 (13)
A Review of Biological Image Analysis

Author(s): Weiyang Chen, Weiwei Li, Xiangjun Dong and Jialun Pei
Pages: 1-7 (7)
Feature Extractions for Computationally Predicting Protein Post-translational Modifications

Author(s): Guohua Huang and Jincheng Li
Pages: 1-9 (9)
Evaluation and Comparison of Newly Built Linear B-Cell Epitope Predic-tion Software from a Users’ Perspective

Author(s): Xiangyu Wang, Zhonglu Ren, Qi Sun, Xuan Wan, Yaqing Sun, Ying Hua, Muqing Fu, Na Shao, Yanli Du, Chengsong Wan and Qiwei Zhang
Pages: 1-8 (8)
A Review of Epidemic Models Related to Meteorological Factors

Author(s): Yuewu Liu , Yan Peng, Qingfan Li and Xiangquan Xiong
Pages: 1-7 (7)
Methods for Mining Single Nucleotide Polymorphism Data of Complex Diseases

Author(s): Xiong Li
Pages: 1-6 (6)
An Error Correction and DeNovo Assembly Approach for Nanopore Reads using Short Reads

Author(s): Mehdi Kchouk and Mourad Elloumi
Pages: 1-12 (12)
Natural Vector Method for Virus Phylogenetic Classification: A Mini-Review

Author(s): Chenglong Yu
Pages: 1-5 (5)
Searching Exact Tandem Repeats in DNA Sequences Using Enhanced Suffix Array

Author(s): Shivika Gupta and Rajesh Prasad
Pages: 1-7 (7)
A Heterogeneous Networks Fusion Algorithm Based on Local Topological Information for Neurodegenerative Disease

Author(s): Xue Jiang, Han Zhang, Xiongwen Quan and Yanbin Yin
Pages: 1-11 (11)
In Silico Identification of Conserved Mirnas from Physcomitrella Patens Ests and Their Target Characterization

Author(s): Behzad Hajieghrari, Naser Farrokhi, Bahram Goliaei and Kaveh Kavousi
Pages: 1-10 (10)
In-silico Evidences of Regulatory Roles of WT1 Transcription Factor Binding Sites on the Intervening Sequences of the Human Bcl-2 Gene

Author(s): Nazanin Gholampour-Faroji, Najmeh Farmanbar, Aliakbar Haddad-Mashhadrizeh, Mahdi Mirahmadi, Hassan Monhemi, Safoora Shahreki-Mojahed, Ahmadreza Bahrami, Mohammadreza Housaindokht, Maryam Moghada Matin, Alireza Zomorodipour, Parisa Dadjoo and Mahdi Nohtani
Pages: 1-13 (13)
Prediction of the Interaction between Magnolia Extract, Herbal Medicines, with Human Serum Albumin Using Molecular Dynamics Simulation

Author(s): Tayebeh Sharifi and Yousef Ghayeb
Pages: 1-9 (9)
Detection of Genes Associated with Follicle Development Through Tran-scriptome Analysis of Bovine Ovarian Follicles GCs

Author(s): Pengfei Li, Jinzhu Meng, Zhiwei Zhu and Lihua Lyu
Pages: 1-14 (14)
Identification and Analysis of Cancer Diagnosis Using Probabilistic Classification Vector Machines with Feature Selection

Author(s): Xiuquan Du, Xinrui Li, Wen Li, Yuanting Yan and Yanping Zhang
Pages: 1-8 (8)
Dedicated Heuristic for Peptide Assembly Problem

Author(s): Tomasz Glowacki, Adam Kozak and Piotr Formanowicz
Pages: 1-7 (7)
Drug and Nondrug Classification based on Deep Learning with Various Feature Selection Strategies

Author(s): Long Yu, Xia Sun, Shengwei Tian, Xinyu Shi and Yilin Yan
Pages: 1-7 (7)
Integration of DNA Methylation Data and Gene Expression Data for Prostate Adenocarcinoma: A Proof of Concept

Author(s): Arpit Singh, Razia Rahman and Yasha Hasija
Pages: 1-8 (8)
An Efficient Prediction of HPV Genotypes from Partial Coding Sequences by Chaos Game Representation and Fuzzy k-Nearest Neighbor Technique

Author(s): Watcharaporn Tanchotsrinon, Chidchanok Lursinsap and Yong Poovorawan
Pages: 1-9 (9)
Computational Analysis of Non-Synonymous SNPs Associated with Ephrin Receptor B2 Gene and Implication in Various Signaling Pathways: A Molecular Dynamics Approach

Author(s): Iftikhar Aslam Tayubi and Sayane Shome
Pages: 1-6 (6)
Conformational Hotspots of Dengue Virus NS5 RdRp

Author(s): Fawad Khan, Ashfaq Ahmad, Abid Ali, Syed Shujait Ali and Tayyab Ur Rehman
Pages: 1-9 (9)
Imputation of Ignorable and Non-Ignorable Missing Values in Large Datasets Using ACO with Local Search

Author(s): Devi Priya Rangasamy and Sivaraj Rajappan
Pages: 1-10 (10)
Alterations in Structural and Biological Activities of Merozoite Surface Protein 2 due to O-GlcNAc Modification: In Silico Approach

Author(s): Jawaria Munir, Zeeshan Iqbal, Wajahat M. Qazi, Daniel C. Hoessli, Zahid Mahmood and Nasir Uddin
Pages: 1-9 (9)
A Composite Entropy Model in a Multiobjective Framework for Gene Regulatory Networks

Author(s): Aurpan Majumder, Mrityunjay Sarkar, Harihar Dash and Indupalli Akhilesh
Pages: 1-10 (10)
Information Content Estimate of Model Proteomes: A Primary Structure Perspective

Author(s): Sertac Eroglu
Pages: 1-8 (8)
SCAN-Toolbox: Structural COBRA Add-oN (SCAN) for Analysing Large Metabolic Networks

Author(s): Yazdan Asgari, Zahra Zabihinpour and Ali Masoudi-Nejad
Pages: 1-8 (8)
Development and Cross-genera Transferability of Ginger EST-SSR Markers for Cardamom

Author(s): Mathavaraj Sakthipriya and Kalluvettankuzhy Krishnannair Sabu
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A Weighted Association Rule Mining Method for Predicting HCV-Human Protein Interactions

Author(s): M. Indhumathy, Ahmed R. Nabhan and S. Arumugam
Pages: 1-12 (12)
A Review of Software Tools for Pathway Crosstalk Inference

Author(s): Julieta S. Dussaut, Rocío L. Cecchini, Cristian A. Gallo, Ignacio Ponzoni and Jessica A. Carballido
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Computational Modeling of Small Molecule Inhibitors of Mitochondrial Fusion

Author(s): Sonam Arora, Salma Jamal, Sonam Gaba, Yasha Hasija and Vinod Scaria
Pages: 1-8 (8)
Investigating Key Genes in Type 2 Diabetes Mellitus Via Combining mAP-KL and Mutual Information Network

Author(s): Guiyan Chen, Weihai Qiu, Shuze Xia and Lijuan Wang
Pages: 1-7 (7)
Codon Usage of Expansin Genes in Populus trichocarpa

Author(s): Jian Li, Haoyang Li, Junkai Zhi, Chuzhao Shen, Xuesong Yang and Jichen Xu
Pages: 1-10 (10)
Molecular Beacon Based Biosensing for Detection of Pathogenic Water Borne Multiple Fungal Strains: An in-silico Approach

Author(s): Sonali Mishra and Krishna Misra
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Improved Algorithm for the Detection of Cancerous cells using Discrete Wavelet transformation of Genomic sequences

Author(s): T M INBAMALAR and R SIVAKUMAR
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DeepInteract: Deep Neural Network based Protein-Protein Interaction prediction tool

Author(s): Sunil Patel, Rashmi Tripathi, Vandana Kumari and Pritish Kumar Varadwaj
Pages: 1-7 (7)
Improving clustering of microRNA microarray data by incorporating functional similarity

Author(s): Yang Yang, Zhichen Wu and Wei Kong
Pages: 1-8 (8)
Prediction of Protein-Peptide Interactions with a Nearest Neighbor Algorithm

Author(s): Bi-Qing Li, Yu-Hang Zhang, Mei-ling Jin, Tao Huang and Y D Cai
Pages: 1-11 (11)
Content-Based Search on Time-Series Microarray Databases using Cluster-Based Fingerprints

Author(s): Esma Erguner Ozkoc and Hasan Ogulc
Pages: 1-8 (8)
Identification of Drug-Drug Interactions Using Chemical Interactions

Author(s): Lei Chen, Chen Chu, Yu-Hang Zhang, Mingyue Zheng, LiuCun Zhu, XiangYin Kong and Tao Huang
Pages: 1-9 (9)
Discriminating Ramos and Jurkat Cells with Image Textures from Diffraction Imaging Flow Cytometry Based on a Support Vector Machine

Author(s): Ning Zhang, Yu Sa, Yu Guo, Lin Wang, Ping Wang and Yuanming Feng
Pages: 1-7 (7)
Finger Base - An Algorithm to Predict the Incidence of Zinc Finger Motif From Uncharacterized Proteins

Author(s): Subramanian Arumugam and Mohan Ajitha
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Implication on the function of novel Xn-relE toxin structure of Xenorhabdus nematophila using Homology modeling

Author(s): Lalit Kumar Gautam, Ragothaman M. Yennamalli and Jitendra Singh Rathore
Pages: 1-8 (8)
Timely Identification of Disease by Parallel Real-time Automated Processing of Huge Medical Databases of Images Distributed Geographically, through Knowledge Sharing

Author(s): DALAL BARDOU, Kun Zhang and Sayed Mohammad Ahmad
Pages: 1-6 (6)
MetalExplorer, a Bioinformatics Tool for the Improved Prediction of Eight Types of Metal-binding Sites Using a Random Forest Algorithm with Two-step Feature Selection

Author(s): Jiangning Song, Chen Li, Cheng Zheng, Jerico Revote, Ziding Zhang and Geoffrey I Webb
Pages: 1-10 (10)
Using a machine-learning approach to predict discontinuous antibody-specific B-cell epitopes

Author(s): Yiqi Lin, Xiaoping Min, Liangliang Li, Hai Yu, Shengxiang Ge, Jun Zhang and Ningshao Xia
Pages: 1-10 (10)
Analysis and Prediction of Nitrated Tyrosine Sites with the mRMR Method and Support Vector Machine Algorithm

Author(s): Jing Lu, Shao Peng Wang, Yu-Dong Cai and Qing Zhang
Pages: 1-11 (11)
Euler String-Based Compression of Tree-structured Data and its Application to Analysis of RNAs 1

Author(s): Liwei Liu, Tomoya Mori, Yang Zhao, Morihiro Hayashida and Tatsuya Akutsu
Pages: 1-9 (9)
Cloning, Bioinformatic Analysis and Expression Pattern of Phospholipase D Gene Family in Vitis vinifera

Author(s): Dan Yu, Qimin Chen, Weidong Huang, Sibao Wan and Jicheng Zhan
Pages: 1-8 (8)
Cancer Diagnosis Through IsomiR Expression with Machine Learning Method

Author(s): Zhijun Liao, Quan Zou, Dapeng Li, Lisheng Li and Xinrui Wang
Pages: 1-7 (7)
A Novel Method for Better Bacterial Genome Assembly from Illumina data

Author(s): Peixiang Ni, Wenkui Dai, Yongfeng Liu, Zhenyu Yang, Tao Zhou, Shuqing Liang, Tong Wang, Jing Xu and Yun Zhao
Pages: 1-11 (11)
Gene Selection Using High Dimensional Gene Expression Data: An Appraisal

Author(s): Abhishek Bhola and Shailendra Singh
Pages: 1-9 (9)
The complexity of promoter regions based on a vector topological entropy

Author(s): Shuilin Jin, Zhuo Wang, Junyu Lin, Jia Wang, Xiurui Zhang, Renjie Tan, Chuanbin Zhang, Zhe Wang, Wanqian Guo and Li Xu
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Identification of Robust Clustering Methods in Gene Expression Data Analysis

Author(s): Bipul Hossen and Siraj- Ud- Doulah
Pages: 1-5 (5)

E-Pub Full Text Articles

Information Fusion in Biological Network Inference

RGDtrip: A Database for the Investigation of Proteins Containing the RGD Tripeptide

A Pipeline Architecture for Inferring and Visualizing Gene Networks from cDNA Microarray Expression Data in Crop Plants

Adaptive Genetic Algorithm with Exploration-Exploitation Tradeoff for Preprocessing Microarray Datasets

Indole Alkaloids as New Leads for the Design and Development of Novel DPP-IV Inhibitors for the Treatment of Diabetes

A Review of Biological Image Analysis

Feature Extractions for Computationally Predicting Protein Post-translational Modifications

Evaluation and Comparison of Newly Built Linear B-Cell Epitope Predic-tion Software from a Users’ Perspective

A Review of Epidemic Models Related to Meteorological Factors

Methods for Mining Single Nucleotide Polymorphism Data of Complex Diseases

An Error Correction and DeNovo Assembly Approach for Nanopore Reads using Short Reads

Natural Vector Method for Virus Phylogenetic Classification: A Mini-Review

Searching Exact Tandem Repeats in DNA Sequences Using Enhanced Suffix Array

A Heterogeneous Networks Fusion Algorithm Based on Local Topological Information for Neurodegenerative Disease

In Silico Identification of Conserved Mirnas from Physcomitrella Patens Ests and Their Target Characterization

In-silico Evidences of Regulatory Roles of WT1 Transcription Factor Binding Sites on the Intervening Sequences of the Human Bcl-2 Gene

Prediction of the Interaction between Magnolia Extract, Herbal Medicines, with Human Serum Albumin Using Molecular Dynamics Simulation

Detection of Genes Associated with Follicle Development Through Tran-scriptome Analysis of Bovine Ovarian Follicles GCs

Identification and Analysis of Cancer Diagnosis Using Probabilistic Classification Vector Machines with Feature Selection

Dedicated Heuristic for Peptide Assembly Problem

Drug and Nondrug Classification based on Deep Learning with Various Feature Selection Strategies

Integration of DNA Methylation Data and Gene Expression Data for Prostate Adenocarcinoma: A Proof of Concept

An Efficient Prediction of HPV Genotypes from Partial Coding Sequences by Chaos Game Representation and Fuzzy k-Nearest Neighbor Technique

Computational Analysis of Non-Synonymous SNPs Associated with Ephrin Receptor B2 Gene and Implication in Various Signaling Pathways: A Molecular Dynamics Approach

Conformational Hotspots of Dengue Virus NS5 RdRp

Imputation of Ignorable and Non-Ignorable Missing Values in Large Datasets Using ACO with Local Search

Alterations in Structural and Biological Activities of Merozoite Surface Protein 2 due to O-GlcNAc Modification: In Silico Approach

A Composite Entropy Model in a Multiobjective Framework for Gene Regulatory Networks

Information Content Estimate of Model Proteomes: A Primary Structure Perspective

SCAN-Toolbox: Structural COBRA Add-oN (SCAN) for Analysing Large Metabolic Networks

Development and Cross-genera Transferability of Ginger EST-SSR Markers for Cardamom

A Weighted Association Rule Mining Method for Predicting HCV-Human Protein Interactions

A Review of Software Tools for Pathway Crosstalk Inference

Computational Modeling of Small Molecule Inhibitors of Mitochondrial Fusion

Investigating Key Genes in Type 2 Diabetes Mellitus Via Combining mAP-KL and Mutual Information Network

Codon Usage of Expansin Genes in Populus trichocarpa

Molecular Beacon Based Biosensing for Detection of Pathogenic Water Borne Multiple Fungal Strains: An in-silico Approach

Improved Algorithm for the Detection of Cancerous cells using Discrete Wavelet transformation of Genomic sequences

DeepInteract: Deep Neural Network based Protein-Protein Interaction prediction tool

Improving clustering of microRNA microarray data by incorporating functional similarity

Prediction of Protein-Peptide Interactions with a Nearest Neighbor Algorithm

Content-Based Search on Time-Series Microarray Databases using Cluster-Based Fingerprints

Identification of Drug-Drug Interactions Using Chemical Interactions

Discriminating Ramos and Jurkat Cells with Image Textures from Diffraction Imaging Flow Cytometry Based on a Support Vector Machine

Finger Base - An Algorithm to Predict the Incidence of Zinc Finger Motif From Uncharacterized Proteins

Implication on the function of novel Xn-relE toxin structure of Xenorhabdus nematophila using Homology modeling

Timely Identification of Disease by Parallel Real-time Automated Processing of Huge Medical Databases of Images Distributed Geographically, through Knowledge Sharing

MetalExplorer, a Bioinformatics Tool for the Improved Prediction of Eight Types of Metal-binding Sites Using a Random Forest Algorithm with Two-step Feature Selection

Using a machine-learning approach to predict discontinuous antibody-specific B-cell epitopes

Analysis and Prediction of Nitrated Tyrosine Sites with the mRMR Method and Support Vector Machine Algorithm

Euler String-Based Compression of Tree-structured Data and its Application to Analysis of RNAs 1

Cloning, Bioinformatic Analysis and Expression Pattern of Phospholipase D Gene Family in Vitis vinifera

Cancer Diagnosis Through IsomiR Expression with Machine Learning Method

A Novel Method for Better Bacterial Genome Assembly from Illumina data

Gene Selection Using High Dimensional Gene Expression Data: An Appraisal

The complexity of promoter regions based on a vector topological entropy

Identification of Robust Clustering Methods in Gene Expression Data Analysis