E-Pub Full Text Articles

Predicting lncRNA-Protein Interactions by Machine Learning Methods: A Review

Author(s): Zhi-Ping Liu*
Pages: 1-10 (10)
Deep Novo A+: Improving the Deep Learning Model for De Novo Peptide Sequencing with Additional Ion Types and Validation Set

Author(s): Lei Di, Yongxing He and Yonggang Lu*
Pages: 1-6 (6)
Classification of Chromosomal DNA Sequences Using Hybrid Deep Learning Architectures

Author(s): Zhihua Du, Xiangdong Xiao and Vladimir N. Uversky*
Pages: 1-7 (7)
Comparisons of microRNA Set Enrichment Analysis Tools on Cancer De-Regulated miRNAs from TCGA Expression Datasets

Author(s): Jianwei Li, Leibo Liu, Qinghua Cui and Yuan Zhou*
Pages: 1-8 (8)
Predicting Thermophilic Proteins by Machine Learning

Author(s): Xian-Fang Wang*, Peng Gao, Yi-Feng Liu, Hong-Fei Li and Fan Lu
Pages: 1-10 (10)
Feature Selection Algorithm for High-dimensional Biomedical Data using Information Gain and Improved Chemical Reaction Optimization

Author(s): Ge Zhang, Pan Yu , Jianlin Wang* and Chaokun Yan*
Pages: 1-15 (15)
Bioinformatics Analysis Reveals Functions of MicroRNAs in Rice Under the Drought Stress

Author(s): Yan Peng, Yuewu Liu* and Xinbo Chen
Pages: 1-10 (10)
Identifying Breast Cancer-induced Gene Perturbations and its Application in Guiding Drug Repurposing

Author(s): Jujuan Zhuang, Shuang Dai, Lijun Zhang, Pan Gao, Yingmin Han, Geng Tian, Na Yan, Min Tang and Ling Kui*
Pages: 1-15 (15)
Identification of Genomic Islands in Synechococcus sp. WH8102 Using Genomic Barcode and Whole-Genome Microarray Analysis

Author(s): Jiahui Pan, Xizi Luo, Tong Shao, Chaoying Li, Tingting Zhao, Shiwei Zhang, Fengfeng Zhou and Guoqing Wang*
Pages: 1-7 (7)
Cancer Diagnosis and Disease Gene Identification via Statistical Machine Learning

Author(s): Liuyuan Chen, Juntao Li* and Mingming Chang
Pages: 1-7 (7)
Screening of SLE-Susceptible SNPs in One Chinese Family with Systemic Lupus Erythematosus

Author(s): Juan Luo*, Yanming Meng, Jianzhao Zhai, Ying Zhu, Yizhou Li and Yongkang Wu
Pages: 1-10 (10)
Densely Dilated Spatial Pooling Convolutional Network using Benign Loss Functions for Imbalanced Volumetric Prostate Segmentation

Author(s): Qiuhua Liu, Min Fu, Hao Jiang and Xinqi Gong*
Pages: 1-11 (11)
Formalization and Semantic Integration of Heterogeneous Omics Annotations for Exploratory Searches

Author(s): Omer Irshad* and Muhammad Usman Ghani Khan
Pages: 1-17 (17)
Sequence-based Identification of Arginine Amidation Sites in Proteins Using Deep Representations of Proteins and PseAAC

Author(s): Sheraz Naseer*, Waqar Hussain, Yaser Daanial Khan and Nouman Rasool
Pages: 1-12 (12)
Bioinformatics Analysis of the Rhizosphere Microbiota of Dangshan Su Pear in Different Soil Types

Author(s): Xiaojing Ma, Sambhaji Balaso Thakar, Huimin Zhang, Zequan Yu, Li Meng and Junyang Yue*
Pages: 1-12 (12)
Exploiting XG Boost For Predicting Enhancer-Promoter Interactions

Author(s): Xiaojuan Yu, Jianguo Zhou, Mingming Zhao , Chao Yi, Qing Duan, Wei Zhou* and Jin Li
Pages: 1-10 (10)
A Deep Convolutional Neural Network to Improve the Prediction of Protein Secondary Structure

Author(s): Lin Guo, Qian Jiang, Xin Jin*, Lin Liu, Wei Zhou, Shaowen Yao, Min Wu and Yun Wang
Pages: 1-11 (11)
Screening and Analysis of Hypolipidemic Components from Shuangdan Capsule based on Pancreatic Lipase

Author(s): Qi Yj*, Lu Hn, Zhao Ym, Wang Z, Ji Yj and Jin Nz
Pages: 1-15 (15)
Aggregation Prone Regions in Antibody Sequences Raised Against Vibrio cholerae: A Bioinformatic Approach

Author(s): Zakia Akter, Anamul Haque, Md. Sabir Hossain, Firoz Ahmed and Md Asiful Islam*
Pages: 1-22 (22)
Hardware Performance Evaluation of de novo Transcriptome Assembly Software in Amazon Elastic Compute Cloud

Author(s): Fernando Mora-Márquez, José Luis Vázquez-Poletti, Víctor Chano, Carmen Collada, Álvaro Soto and Unai López de Heredia*
Pages: 1-11 (11)
A 2D Non-degeneracy Graphical Representation of Protein Sequence and its Applications

Author(s): Xiaoli Xie* and Yunxiu Zhao
Pages: 1-9 (9)
A Sequence-Segment Neighbor Encoding Schema for Protein Hotspot Residue Prediction

Author(s): Peng Chen*, Tong Shen, Youzhi Zhang and Bing Wang
Pages: 1-10 (10)
Co-expression Network Analysis Revealing the Potential Regulatory Roles of lncRNAs in Atrial Fibrillation

Author(s): Lishui Shen, Guilin Shen, Xiaoli Lu, Guomin Ding and Xiaofeng Hu*
Pages: 1-8 (8)
A Sequential Ensemble Model for Communicable Disease Forecasting

Author(s): Nashreen Sultana*, Nonita Sharma, Krishna Pal Sharma and Shobhit Verma
Pages: 1-10 (10)
An Information Gain-based Method for Evaluating the Classification Power of Features Towards Identifying Enhancers

Author(s): Tianjiao Zhang, Rongjie Wang, Qinghua Jiang* and Yadong Wang
Pages: 1-7 (7)
Genetic Algorithm-based Feature Selection Approach for Enhancing the Effectiveness of Similarity Searching in Ligand-based Virtual Screening

Author(s): Fouaz Berrhail* and Hacene Belhadef
Pages: 1-14 (14)
A Drug Target Interaction Prediction based on LINE-RF Learning

Author(s): Jihong Wang*, Yue Shi, Xiaodan Wang and Huiyou Chang
Pages: 1-8 (8)
An Analysis Model of Protein Mass Spectrometry Data and Its Application

Author(s): Pingan He*, Longao Hou, Hong Tao, Qi Dai and Yuhua Yao
Pages: 1-7 (7)
Model with the GBDT for Colorectal Adenoma Risk Diagnosis

Author(s): Junbo Gao*, Lifeng Zhang, Gaiqing Yu, Guoqiang Qu, Yanfeng Li and Xuebing Yang
Pages: 1-9 (9)
Relevance of Molecular Docking Studies in Drug Designing

Author(s): Ritu Jakhar, Mehak Dangi, Alka Khichi and Anil Kumar Chhillar*
Pages: 1-9 (9)
Research on Psychological Scales Based on the Multitheory Fusion

Author(s): Guangdi Liu, Yu Chen Li, Yue Wang, Jing Xiang Liu, Yong Sheng Sang, Wei Zhang and Le Zhang *
Pages: 1-9 (9)
Prediction of Neddylation Sites Using the Composition of k-spaced Amino Acid Pairs and Fuzzy SVM

Author(s): Zhe Ju* and Shi-Yun Wang
Pages: 1-7 (7)
ConvsPPIS: Identifying Protein-protein Interaction Sites by an Ensemble Convolutional Neural Network with Feature Graph

Author(s): Huaixu Zhu, Xiuquan Du* and Yu Yao
Pages: 1-11 (11)
APP Medical Diagnostic Check-Up Consultation System Based on Speech Recognition

Author(s): Zhi Li, Yusen Wang, Shiwen Tai, Jingquan Wang, Yusong Huang, Wu Jiang and Hao Zhang*
Pages: 1-17 (17)
The Regulation of Target Genes by Co-occupancy of Transcription Factors, c-Myc and Mxi1 with Max in the Mouse Cell Line

Author(s): Hui Wang, Yuan Liu, Hua Guan and Guo-Liang Fan*
Pages: 1-9 (9)
Analysis of Oncogene Protein Structure Using Small World Network Concept

Author(s): Neetu Kumari and Anshul Verma*
Pages: 1-9 (9)
A Novel Integrative Approach for Non-Coding RNA Classification based on Deep Learning

Author(s): Abdelbasset Boukelia*, Anouar Boucheham, Meriem Belguidoum, Mohamed Batouche, Farida Zehraoui and Fariza Tahi
Pages: 1-11 (11)
Identification of Novel Key Targets and Candidate Drugs in Oral Squamous Cell Carcinoma

Author(s): Juan Liu, Xinjie Lian, Feng Liu, Xueling Yan, Chunyan Cheng, Lijia Cheng, Xiaolin Sun* and Zheng Shi*
Pages: 1-10 (10)
Gene Regulatory Network Construction Based on a Particle Swarm Optimization of a Long Short-term Memory Network

Author(s): Zhenhao Tang*, Xiangying Chai, Yu Wang and Shengxian Cao
Pages: 1-12 (12)
Recent Advances on the Machine Learning Methods in Identifying Phage Virion Proteins

Author(s): Yingjuan Yang, Chunlong Fan and Qi Zhao*
Pages: 1-5 (5)
A Review of Pathway Databases and Related Methods Analysis

Author(s): Ali Ghulam, Xiujuan Lei*, Min Guo and Chen Bian
Pages: 1-17 (17)
SimExact – An Efficient Method To Compute Function Similarity Between Proteins Using Gene Ontology

Author(s): Najmul Ikram*, Muhammad Abdul Qadir and Muhammad Tanvir Afzal
Pages: 1-11 (11)
A Survey of Metrics Measuring Difference for Rooted Phylogenetic Trees

Author(s): Juan Wang, Xinyue Qi, Bo Cui and Maozu Guo*
Pages: 1-6 (6)
Lung Cancer Classification and Gene Selection by Combining Affinity Propagation Clustering and Sparse Group Lasso

Author(s): Juntao Li*, Mingming Chang, Qinghui Gao, Xuekun Song and Zhiyu Gao
Pages: 1-10 (10)
ZFARED: A Database of the Antioxidant Response Elements in zebrafish

Author(s): Azhwar Raghunath*, Raju Nagarajan and Ekambaram Perumal*
Pages: 1-5 (5)
Whole Aegilops tauschii Transcriptome Investigation Revealed Nine Novel miRNAs Involved in Stress Response

Author(s): Behnam Bakhshi* and Ehsan Mohseni Fard
Pages: 1-8 (8)
Complex Networks, Gene Expression and Cancer Complexity: A Brief Review of Methodology and Applications

Author(s): A. C. Iliopoulos, G. Beis, P. Apostolou and I. Papasotiriou*
Pages: 1-28 (28)
Finding Community of Brain Networks Based on Neighbor Index and DPSO with Dynamic Crossover

Author(s): Jie Zhang, Junhong Feng* and Fang- Xiang Wu*
Pages: 1-13 (13)
Application of a Deep Matrix Factorization Model on Integrated Gene Expression Data

Author(s): Yong- Jing Hao, Mi-Xiao Hou, Ying- Lian Gao, Jin- Xing Liu* and Xiang- Zhen Kong
Pages: 1-8 (8)
A Machine Learning-based Diagnosis of Thyroid Cancer Using Thyroid Nodules Ultrasound Images

Author(s): Xuesi Ma, Baohang Xi, Yi Zhang, Lijuan Zhu, Xin Sui* and Jialiang Yang*
Pages: 1-10 (10)
High-dimensional Causal Mediation Analysis with a Large Number of Mediators Clumping at Zero to Assess the Contribution of the Microbiome to the Risk of Bacterial Pathogen Colonization in Older Adults

Author(s): Wei Liu, John P. Haran, Arlene Ash, Jeroan Allison, Shangyuan Ye, Jenifer Tjia, Vanni Bucci and Bo Zhang*
Pages: 1-26 (26)
White Blood Cell Image Segmentation based on Color Component Combination and Contour Fitting

Author(s): Chuansheng Wang, Hong Zhang*, Zuoyong Li*, Xiaogen Zhou*, Yong Cheng and Rongyan Chen
Pages: 1-9 (9)
Using the Chou’s Pseudo Component to Predict the ncRNA Locations Based on the Improved K-nearest Neighbor (iKNN) Classifier

Author(s): Chengyan Wu*, Qianzhong Li, Ru Xinga and Guo Liang Fan
Pages: 1-11 (11)
Docking Techniques in Toxicology: An Overview

Author(s): Meenakshi Gupta, Ruchika Sharma and Anoop Kumar*
Pages: 1-10 (10)
Analysis and Comparison of RNA Pseudouridine Site Prediction Tools

Author(s): Wei Chen* and Kewei Liu
Pages: 1-8 (8)
Analysis of the Epigenetic Signature of Cell Reprogramming by Computational DNA Methylation Profiles

Author(s): Yongchun Zuo*, Mingmin Song, Hanshuang Li, Xing Chen, Pengbo Cao, Lei Zheng and Guifang Cao
Pages: 1-11 (11)
Integrating Second-order Moving Average and Over-sampling Algorithm to Predict Apoptosis Protein Subcellular Localization

Author(s): Yunyun Liang and Shengli Zhang*
Pages: 1-11 (11)
The Human OncoBiome Database: A Database of Cancer Microbiome Datasets

Author(s): Nadia and Jayashree Ramana*
Pages: 1-6 (6)
Predicting LncRNA Subcellular Localization Using Unbalanced Pseudo-k Nucleotide Compositions

Author(s): Xiao-Fei Yang, Yang Gao* and Pu-Feng Du*
Pages: 1-9 (9)
Improving Multi-type Gram-negative Bacterial Secreted Protein Prediction via Protein Evolutionary Information and Feature Ranking

Author(s): Liang Kong*, Lichao Zhang and Shiqian He
Pages: 1-9 (9)
Predicting Protein Phosphorylation Sites Based on Deep Learning

Author(s): Haixia Long*, Zhao Sun, Manzhi Li, HaiYan Fu and MingCai Lin
Pages: 1-9 (9)
An in silico Immunogenicity Analysis for PbHRH: An Antiangiogenic Peptibody by fusing HRH Peptide and Human IgG1 Fc Fragment

Author(s): Lin Ning, Bifang He, Juanjuan Kang and Jian Huang *
Pages: 1-7 (7)
Identification of Lysine Carboxylation Sites in Proteins by Integrating Statistical Moments and Position Relative Features via General PseAAC

Author(s): Saba Amanat, Adeel Ashraf, Waqar Hussain, Nouman Rasool and Yaser Daanial Khan*
Pages: 1-12 (12)
Identification of Cancerlectins by Using Cascade Linear Discriminant Analysis and Optimal g-gap Tripeptide Composition

Author(s): Liangwei Yang , Hui Gao *, Keyu Wu, Haotian Zhang , Changyu Li and Lixia Tang
Pages: 1-10 (10)
Natural Scene Nutrition Information Acquisition and Analysis Based on Deep Learning

Author(s): Tianyue Zhang, Xu Wei, Zhi Li, Fangzhe Shi, Zhiqiang Xia, Mengru Lian, Ling Chen and Hao Zhang*
Pages: 1-9 (9)
Clinical Pathways Optimization from Decision Rules Based on Fusion Stream Mining and Fuzzy Unordered Rule Induction Strategy in Diabetes Treatment

Author(s): Simon Fong, Dana Wang, Jinan Fiaidhi, Sabah Mohammed, Libo Chen* and Li Ling
Pages: 1-11 (11)

E-Pub Full Text Articles

Predicting lncRNA-Protein Interactions by Machine Learning Methods: A Review

Deep Novo A+: Improving the Deep Learning Model for De Novo Peptide Sequencing with Additional Ion Types and Validation Set

Classification of Chromosomal DNA Sequences Using Hybrid Deep Learning Architectures

Comparisons of microRNA Set Enrichment Analysis Tools on Cancer De-Regulated miRNAs from TCGA Expression Datasets

Predicting Thermophilic Proteins by Machine Learning

Feature Selection Algorithm for High-dimensional Biomedical Data using Information Gain and Improved Chemical Reaction Optimization

Bioinformatics Analysis Reveals Functions of MicroRNAs in Rice Under the Drought Stress

Identifying Breast Cancer-induced Gene Perturbations and its Application in Guiding Drug Repurposing

Identification of Genomic Islands in Synechococcus sp. WH8102 Using Genomic Barcode and Whole-Genome Microarray Analysis

Cancer Diagnosis and Disease Gene Identification via Statistical Machine Learning

Screening of SLE-Susceptible SNPs in One Chinese Family with Systemic Lupus Erythematosus

Densely Dilated Spatial Pooling Convolutional Network using Benign Loss Functions for Imbalanced Volumetric Prostate Segmentation

Formalization and Semantic Integration of Heterogeneous Omics Annotations for Exploratory Searches

Sequence-based Identification of Arginine Amidation Sites in Proteins Using Deep Representations of Proteins and PseAAC

Bioinformatics Analysis of the Rhizosphere Microbiota of Dangshan Su Pear in Different Soil Types

Exploiting XG Boost For Predicting Enhancer-Promoter Interactions

A Deep Convolutional Neural Network to Improve the Prediction of Protein Secondary Structure

Screening and Analysis of Hypolipidemic Components from Shuangdan Capsule based on Pancreatic Lipase

Aggregation Prone Regions in Antibody Sequences Raised Against Vibrio cholerae: A Bioinformatic Approach

Hardware Performance Evaluation of de novo Transcriptome Assembly Software in Amazon Elastic Compute Cloud

A 2D Non-degeneracy Graphical Representation of Protein Sequence and its Applications

A Sequence-Segment Neighbor Encoding Schema for Protein Hotspot Residue Prediction

Co-expression Network Analysis Revealing the Potential Regulatory Roles of lncRNAs in Atrial Fibrillation

A Sequential Ensemble Model for Communicable Disease Forecasting

An Information Gain-based Method for Evaluating the Classification Power of Features Towards Identifying Enhancers

Genetic Algorithm-based Feature Selection Approach for Enhancing the Effectiveness of Similarity Searching in Ligand-based Virtual Screening

A Drug Target Interaction Prediction based on LINE-RF Learning

An Analysis Model of Protein Mass Spectrometry Data and Its Application

Model with the GBDT for Colorectal Adenoma Risk Diagnosis

Relevance of Molecular Docking Studies in Drug Designing

Research on Psychological Scales Based on the Multitheory Fusion

Prediction of Neddylation Sites Using the Composition of k-spaced Amino Acid Pairs and Fuzzy SVM

ConvsPPIS: Identifying Protein-protein Interaction Sites by an Ensemble Convolutional Neural Network with Feature Graph

APP Medical Diagnostic Check-Up Consultation System Based on Speech Recognition

The Regulation of Target Genes by Co-occupancy of Transcription Factors, c-Myc and Mxi1 with Max in the Mouse Cell Line

Analysis of Oncogene Protein Structure Using Small World Network Concept

A Novel Integrative Approach for Non-Coding RNA Classification based on Deep Learning

Identification of Novel Key Targets and Candidate Drugs in Oral Squamous Cell Carcinoma

Gene Regulatory Network Construction Based on a Particle Swarm Optimization of a Long Short-term Memory Network

Recent Advances on the Machine Learning Methods in Identifying Phage Virion Proteins

A Review of Pathway Databases and Related Methods Analysis

SimExact – An Efficient Method To Compute Function Similarity Between Proteins Using Gene Ontology

A Survey of Metrics Measuring Difference for Rooted Phylogenetic Trees

Lung Cancer Classification and Gene Selection by Combining Affinity Propagation Clustering and Sparse Group Lasso

ZFARED: A Database of the Antioxidant Response Elements in zebrafish

Whole Aegilops tauschii Transcriptome Investigation Revealed Nine Novel miRNAs Involved in Stress Response

Complex Networks, Gene Expression and Cancer Complexity: A Brief Review of Methodology and Applications

Finding Community of Brain Networks Based on Neighbor Index and DPSO with Dynamic Crossover

Application of a Deep Matrix Factorization Model on Integrated Gene Expression Data

A Machine Learning-based Diagnosis of Thyroid Cancer Using Thyroid Nodules Ultrasound Images

High-dimensional Causal Mediation Analysis with a Large Number of Mediators Clumping at Zero to Assess the Contribution of the Microbiome to the Risk of Bacterial Pathogen Colonization in Older Adults

White Blood Cell Image Segmentation based on Color Component Combination and Contour Fitting

Using the Chou’s Pseudo Component to Predict the ncRNA Locations Based on the Improved K-nearest Neighbor (iKNN) Classifier

Docking Techniques in Toxicology: An Overview

Analysis and Comparison of RNA Pseudouridine Site Prediction Tools

Analysis of the Epigenetic Signature of Cell Reprogramming by Computational DNA Methylation Profiles

Integrating Second-order Moving Average and Over-sampling Algorithm to Predict Apoptosis Protein Subcellular Localization

The Human OncoBiome Database: A Database of Cancer Microbiome Datasets

Predicting LncRNA Subcellular Localization Using Unbalanced Pseudo-k Nucleotide Compositions

Improving Multi-type Gram-negative Bacterial Secreted Protein Prediction via Protein Evolutionary Information and Feature Ranking

Predicting Protein Phosphorylation Sites Based on Deep Learning

An in silico Immunogenicity Analysis for PbHRH: An Antiangiogenic Peptibody by fusing HRH Peptide and Human IgG1 Fc Fragment

Identification of Lysine Carboxylation Sites in Proteins by Integrating Statistical Moments and Position Relative Features via General PseAAC

Identification of Cancerlectins by Using Cascade Linear Discriminant Analysis and Optimal g-gap Tripeptide Composition

Natural Scene Nutrition Information Acquisition and Analysis Based on Deep Learning

Clinical Pathways Optimization from Decision Rules Based on Fusion Stream Mining and Fuzzy Unordered Rule Induction Strategy in Diabetes Treatment